Hi,
 I have 12 dye-swap design microarrays for 6 samples,  which means each
sample has 2 microarrays with dye swap, and we did the analysis using R
limma package.  When I submit the paper, the database asked for normalized
data per each sample (biological replicate) for dye-swap experiment. But I
only can get normalized data for each slide, and I have two slides per
sample. I don't know how to get a single M value for each biological
replicate. Can somebody help me figure out this issue?

Thank you so much!

Fei

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