Dear all,

I got the following error message when I was trying to use the function “getCrlmmSummaries()” to retrieve results generated by running CRLMM genotyping algorithm successfully over 9 Affy SNP 6.0 chips.

####################
> outObj_crlmm<-getCrlmmSummaries(outDir)
Error in dimnames(x) <- dn :
  length of 'dimnames' [2] not equal to array extent

Enter a frame number, or 0 to exit

1: getCrlmmSummaries(outDir)
2: new("SnpCnvCallSetPlus", calls = readSummaries("calls", tmpdir), callsConfi
3: initialize(value, ...)
4: initialize(value, ...)
5: .local(.Object, ...)
6: assayDataNew("lockedEnvironment", calls = calls, callsConfidence = callsCon
7: readSummaries("alleleA", tmpdir)
8: `colnames<-`(`*tmp*`, value = c("MDSNP", "02_00004758_CN_080925.CEL", "MDSN
#####################

My system:
Linux x86_64 with 16 GB memory.

> sessionInfo()
R version 2.8.1 (2008-12-22)
x86_64-unknown-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] splines   tools     stats     graphics  grDevices utils     datasets
[8] methods   base

other attached packages:
[1] oligo_1.6.0          oligoClasses_1.4.0   affxparser_1.14.2
[4] AnnotationDbi_1.4.3  preprocessCore_1.4.0 RSQLite_0.7-1
[7] DBI_0.2-4            Biobase_2.2.2


Any comments are welcome.
Thanks in advance!

PingHsun Hsieh

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