Thank you, Pan. I am grateful to your help!
So for the new platform, I can basically use
the one generated by produceGEOPlatformFile?

Regards,
     Allen


On Thu, Feb 26, 2009 at 4:28 PM, Pan Du <dupan@northwestern.edu> wrote:

>  That is a problem of Illumina platform. The probe number might be
> different across different batches of the same version.
> Actually, that is also one reason that we pooled different versions of
> Illumina chips as a single library (lumixxxxAll.db).
>
> You can report this problem to GEO and submit a new platform, which might
> need the approval of the GEO.
> I cannot provide more help on this.
>
>
> Pan
>
>
> On 2/26/09 3:12 PM, "ss" <affysnp@gmail.com> wrote:
>
> Thanks, Pan for the help.
>
> Unfortunately, there are 46,713 rows in my data which is less than 46, 718
> rows of
> the platform GPL6790. So GEO detected this as error:
>
> ....
> The data table of "FOM173/Nic-rep2" has 46713 ID_REFs out of a possible
> 46718.
> Your submission has failed MIAME validation.
>
> But I cannot find a platform of Illumina array of 46,713 rows in GEO. What
> can I do?
>
> Best,
>       Allen
>
>

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