Hi Allen,

By comparing your chip version HumanWG6_V2_11223189_B with the platform
GPL6790, I found GPL6790 uses “Target” Id as identifier. Because  function
produceGEOSubmissionFile assumes “ProbeID” is used by default, it causes ID
mismatch errors. As a temporary, you can first convert your data as “Target”
ID indexed, then produce GEO submission file.

Here is some example code:
## suppose lumiRaw is the raw data, lumiNormalized is the normalized data
and "sampleInfoFile.txt" keeps the sample information
> illuminaID = nuID2IlluminaID(featureNames(lumiRaw), species="Human",
idType="Gene")
> featureNames( lumiRaw) <- featureNames( lumiNormalized ) <- illuminaID
> 
> produceGEOSubmissionFile(lumiNormalized, lumiRaw,  sampleInfo =
"sampleInfoFile.txt")

Hope this will work.


Pan



On 2/26/09 1:18 PM, "Sean Davis" <seandavi@gmail.com> wrote:

> 
> 
> On Thu, Feb 26, 2009 at 1:59 PM, ss <affysnp@gmail.com> wrote:
>> Dear Sean,
>>  
>> You are absolutely right. ID_REF in my submission file does not match IDs
>> in GPL6790, http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL6790.
>>  
>> The first two rows in my submission file look like:
>>  
>> ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
>> 0006960451 NQqs8dKRwVSgI4SRPk 7.67644911129066 81.2483 6.9638 0.997088792 41
>> 
0002850504 ERVJG9FehRAB6AoIq0 6.89318565949701 0.3596772 2.239353 0.5924309 4>>
0
>>  
>> I appreciate your help!
>>  
> 
> I see.  So, you have nuID in your data.  You can use the nuID2IlluminaID()
> function in the lumi package to do the mapping from nuID to ILMN ids, I
> believe.  That should fix the problem.
> 
> Sean
> 
>  
>> Allen
>> 
>> On Thu, Feb 26, 2009 at 1:49 PM, Sean Davis <seandavi@gmail.com> wrote:
>>> 
>>> 
>>> On Thu, Feb 26, 2009 at 1:30 PM, ss <affysnp@gmail.com> wrote:
>>>> Hi Pan,
>>>> 
>>>> Thanks much! I did manually fill up the blanks in the sampleInfo otherwise
>>>> GEOSubmissionFile would not be generated. You are right about the platform
>>>> ID (I picked one, updated the sampleInfo file and submitted the
>>>> GEOSubmissionFile
>>>> again).
>>>> 
>>>> Now I got the error as:
>>>> 
>>>> Error: At line #27, Invalid ID_REF value "0006960451" in sample
>>>> FOM173-rep1.
>>>> Error: At line #28, Invalid ID_REF value "0002850504" in sample
>>>> FOM173-rep1.
>>>> Error: At line #29, Invalid ID_REF value "0007560397" in sample
>>>> FOM173-rep1.
>>>> Error: At line #30, Invalid ID_REF value "0005360747" in sample
>>>> FOM173-rep1.
>>>> Error: At line #31, Invalid ID_REF value "0002600731" in sample
>>>> FOM173-rep1.
>>>> Error: At line #32, Invalid ID_REF value "0003990110" in sample
>>>> FOM173-rep1.
>>>> Error: At line #33, Invalid ID_REF value "0002120309" in sample
>>>> FOM173-rep1.
>>>> Error: At line #34, Invalid ID_REF value "0006420474" in sample
>>>> FOM173-rep1.
>>>> Error: At line #35, Invalid ID_REF value "0000670095" in sample
>>>> FOM173-rep1.
>>>> Error: At line #36, Invalid ID_REF value "0000130367" in sample
>>>> FOM173-rep1.
>>>> Error: At line #37, Invalid ID_REF value "0003830242" in sample
>>>> FOM173-rep1.
>>>> Error: At line #38, Invalid ID_REF value "0006480041" in sample
>>>> FOM173-rep1.
>>>> Error: At line #39, Invalid ID_REF value "0007510608" in sample
>>>> FOM173-rep1.
>>>> Error: At line #40, Invalid ID_REF value "0001570494" in sample
>>>> FOM173-rep1.
>>>> Error: At line #41, Invalid ID_REF value "0001740092" in sample
>>>> FOM173-rep1.
>>>> Error: At line #42, Invalid ID_REF value "0003440520" in sample
>>>> FOM173-rep1.
>>>> Error: At line #43, Invalid ID_REF value "0006520451" in sample
>>>> FOM173-rep1.
>>>> Error: At line #44, Invalid ID_REF value "0000780746" in sample
>>>> FOM173-rep1.
>>>> Error: At line #45, Invalid ID_REF value "0000150546" in sample
>>>> FOM173-rep1.
>>>> Error: Maximum message limit exceeded
>>>> Your submission has failed MIAME validation.
>>>> Nothing submitted due to validation errors
>>>> Added 0 of 4 entities.
>>>> 
>>>> How to fix this? Any suggestions?
>>> 
>>> Hi, Allen. 
>>> 
>>> What do the IDs in the GPL look like?  Does your ID_REF match? 
>>> 
>>> I would suggest that you work with the GEO staff to do your submission as
>>> these are GEO errors.  Perhaps you can suggest changes to Pan after you have
>>> completed the submission and know better where the problems arose.
>>> 
>>> Sean
>>>  
>>>> 
>>>> 
>>>> On Thu, Feb 26, 2009 at 1:04 PM, Pan Du <dupan@northwestern.edu> wrote:
>>>> 
>>>>> > Hi Allen,
>>>>> >
>>>>> > I am not sure how you produced these files.  My feeling is that you did
>>>>> not
>>>>> > fill in the sample information file correctly.
>>>>> > The process of producing GEO submission file is still not so automatic.
>>>>> > Function â€œproduceGEOSampleInfoTemplateâ€  can help you produce a
>>>>> template of 
>>>> 
>>>>> > sample information, but you have to manually modify some information and
>>>>> > fill in the blanks.
>>>>> > Also, you need to check the following website for some information of
>>>>> SOFT
>>>>> > format when you fill in the table:
>>>>> >   http://www.ncbi.nlm.nih.gov/projects/geo/info/soft2.html
>>>>> >
>>>>> > As for the platform, we recommend to pick one from the existing
>>>>> platforms
>>>>> > if it is already exists. You can find the existing platform from GEO
>>>>> > website. And fill the platform ID in the sample information table.
>>>>> > After you produced the submission file, you just need to submit
>>>>> > GEOSubmissionFile.txt and supplementaryData.Rdata (optional) files.
>>>>> >
>>>>> > We have  submitted quite a few batches of data using them, but bugs
>>>>> might
>>>>> > still exist. Tell me there is still other problems.
>>>>> >
>>>>> >
>>>>> > Pan
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> > On 2/26/09 11:30 AM, "ss" <affysnp@gmail.com> wrote:
>>>>> >
>>>>> >   Dear Pan
>>>>> >
>>>>> > I have been able to use lumi to generate the following
>>>>> > four files related to GEO submission:
>>>>> >
>>>>> > GEOsampleInfo.txt
>>>>> > GEOPlatformFile.txt
>>>>> > GEOSubmissionFile.txt
>>>>> > supplementaryData.Rdata
>>>>> >
>>>>> >
>>>>> > I "rar" them into one archive and use the
>>>>> > GEO Direct Deposit Slip with file format
>>>>> > as SOFT.
>>>>> >
>>>>> > However, I got the errors appended at the end.
>>>>> > I would be very grateful if you could help me
>>>>> >
>>>>> > regarding this matter. We are catching up a deadline
>>>>> > for a revised manuscript.Thank you very much for your
>>>>> > support!!!
>>>>> >
>>>>> > Best wishes
>>>>> >   *Allen
>>>>> >
>>>>> > **Your file is invalid; therefore, your submission has failed. This
>>>>> > submission attempt will be ignored by the GEO curation staff.
>>>>> > *
>>>>> > Validating GEO1.rar (/netmnt/geo/websub/soft/gzhang_GEO1.rar)
>>>>> >
>>>>> > Error: At line #2, Unexpected line: '^' expected, found 'Rar! '.
>>>>> >
>>>>> > Error: At line #3, Unexpected line: '^' expected, found '=
>>>>> ï¿½ï¿½ï¿½?ï¿½ï¿½~!ï¿½ï¿½ï¿½ï¿½ï¿½!'.
>>>> 
>>>>> >
>>>>> >
>>>>> > Error: At line #4, Unexpected line: '^' expected, found
>>>>> > ' ï¿½ï¿½\ GÉ¿ ï¿½*?ï¿½dï±»ï¿½ï¿½ï¿½ï¿½ï¿½ yï¿½ï¿½ï¿½ï¿½*qï¿½sï¿½ï¿½ï¿½
>>>>> 5ï¿½ï¿½>ï¿½ ï¿½ï¿½`ï¿½?ï¿½ï¿½aSï¿½ï¿½ ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½?ï¿½ o
>>>>> > 
>>>>> Gï¿½ï¿½y]ï¿½ï¿½ï¿½sï¿½ï¿½6Gï¿½ï¿½ï¿½^ï¿½ï¿½ï¿½cï¿½ï¿½ï¿½Eï¿½ï¿½.ï¿½×ƒï¿½Rï
>>>>> ¿½ï¿½Aï¿½ï¿½ï¿½ï¿½CÝ» ~ï¿½Rï¿½#ï¿½ Awk ï¿½}ï¿½ï¿½/ ï¿½ï¿½ï¿½9ï¿½ ï¿½ï¿½
>>>>> ï¿½C ï¿½f'.
>>>>> >
>>>>> >
>>>>> > Error: At line #5, Unexpected line: '^' expected, found '0Ý»ï¿½ï¿½
>>>>> > ï¿½ï¿½ÇŒï¿½3ï¿½ï¿½ï¿½?ï¿½ï¿½ï¿½ï¿½ï¿½?ï¿½ï¿½ ï¿½7 ï¿½ï¿½"lï¿½ Ú \~U
>>>>> ï¿½ï¿½ï¿½ï¿½ï¿½Iï¿½ ï¿½i5ï¿½ï¿½.ï¿½ï¿½^ï¿½ï¿½3}ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½'.
>>>>> >
>>>>> > Error: At line #6, Unexpected line: '^' expected, found '] ï¿½ï¿½<ï¿½J
>>>>> > ï¿½ï¿½,^ï¿½F)ï¿½ï¿½r.ï¿½Úµt5Wï¿½ï¿½ï¿½0ï¿½vï¿½%?c'.
>>>> 
>>>>> >
>>>>> >
>>>>> > Error: At line #7, Unexpected line: '^' expected, found
>>>>> > 'ï¿½ï¿½ï¿½gï¿½ï¿½ï¿½]ï¿½qÕœZï¿½Tï¿½iï¿½ azTï¿½ï¿½ ×¿d ï¿½Ï¼ ï¿½ B_ï¿½
>>>>> ï¿½ ï¿½ ï¿½| 'ï¿½b F.8ï¿½ï¿½ÆœVï¿½ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½W.ï¿½ï¿½+{ï¿½ï¿½<
>>>>> > vxï¿½ï¿½ ï¿½ï¿½ï¿½Ã­ï¿½ï¿½Nï¿½ï¿½Û¼ï¿½ï¿½Jï¿½ Pï¿½^0 ï¿½|"!Ç¢Gï¿½
>>>>> ï¿½ï¿½>@ï¿½ï¿½ï¿½Gï¿½?ï¿½Ö£ï¿½ï¿½ï¿½^ï¿½ï¿½ï¿½ ï¿½Sï¿½Yï¿½
>>>>> > ï¿½/ï¿½(ï¿½,ï¿½<`ï¿½Uß E\ï¿½zï¿½\ï¿½ï¿½rï¿½E^ï¿½8ï¿½ `ï¿½pWï¿½ï¿½ï¿½
>>>>> ï¿½}ï¿½ï¿½'. 
>>>> 
>>>>> >
>>>>> >
>>>>> > Error: At line #8, Unexpected line: '^' expected, found
>>>>> > '~ Yvï¿½@xaï¿½iï—½ Gï¿½Ë¥ï¿½ï¿½4ï¿½Z ï¿½_'& #ï¿½\r% ï¿½hï¿½[
>>>>> ï¿½ï¿½fBï¿½ï¿½×¿ ï¿½ ï¿½ï¿½Yï¿½ï¿½8ï¿½Ú¼'ï¿½ï¿½ï¿½1I =ï¿½ ï¿½ï¿½ï¿½
>>>>> > <ï¿½ï¿½ï¿½ï¿½7ï¿½7ï¿½*xï¿½yKï¿½\1ï¿½ï¿½ï¿½/v(u^ yï¿½ ï¿½'ï¿½ Zmï¿½%
>>>>> *m.ï¿½ ï¿½U#ï¿½ï¿½ ï¿½0Hï¿½ï¿½Í“ï¿½ï¿½-ï¿½Oï¿½ï¿½ ï¿½ï¿½ï¿½
>>>>> > 9)ï¿½ï¿½Õ¸ï¿½Ôšßœ84ï¿½ï¿½y(ï¿½3ï¿½fï¿½ï¿½ï¿½ï¿½jï¿½R\A
>>>>> ï¿½ï¿½Rï¿½ï¿½"ï¿½-ï¿½ "/ï¿½ï¿½yCï¿½
>>>>> >
>>>>> > vXï¿½ï¿½)ï¿½Gï¿½K ï¿½S~ï¿½!ï¿½[+yè—· ï¿½ï¿½;ï¿½ï¿½ï¿½ï¿½
>>>>> > o9ï¿½%|@x ~9 wï¿½0ï¿½ï¿½ï¿½ï¿½ï¿½_0ï¿½ ï¿½ï¿½ ï¿½ Irï¿½Tï¿½ï¿½
>>>>> Mqï¿½Tï¿½-ï¿½ï¿½NW_ï¿½&uï¿½ï¿½+Jï¿½ï¿½ï¿½Ç™ï¿½ * xï¿½ï¿½4 ï¿½ï¿½ï¿½'.
>>>> 
>>>>> >
>>>>> > Error: At line #9, Unexpected line: '^' expected, found
>>>>> > 'ï¿½=ï¿½ï¿½ï¿½Ì´ï¿½Xï¿½ï¿½Nï¿½,[ï¿½ï¿½`qï¿½ï¿½ Ò¸ï¿½ï¿½qo ï¿½oï¿½
>>>>> hCJï¿½_ï¿½Ç„f8ï¿½2ï¿½=ï¿½ÖžF -ÝŽï¿½'.
>>>> 
>>>>> >
>>>>> >
>>>>> > Error: At line #10, Unexpected line: '^' expected, found
>>>>> > ' ï¿½6ï¿½x^)ï¿½ï’¯[*;Û‹ï¿½^ Dï¿½/Õ”ï¿½)ï¿½ï¿½Yï¿½%!'ï¿½ï¿½%
>>>>> ï¿½apï¿½ï¿½Wï¿½X`,ï¿½M)ï¿½ï¿½ï¿½ï¿½@qzfpÚ‡ Yï¿½Meï¿½ & q#!ï¿½hï¿½Ö¢ï¿½
>>>>> > ï¿½[ï¿½5ï¿½4aï¿½+ï¿½ï¿½ï¿½ï¿½+ |ï¿½fM"ï¿½ï¿½p@Fï¿½Nï¿½!7
>>>>> ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½jï¿½k.ï¿½ KÝœOt'.
>>>>> >
>>>>> >
>>>>> > Error: At line #11, Unexpected line: '^' expected, found
>>>>> 'sï¿½ï¿½ï¿½xï¿½ï¿½Dï¿½Tï¿½ï¿½` '.
>>>> 
>>>>> >
>>>>> > Error: At line #12, Unexpected line: '^' expected, found
>>>>> > ''&Rï¿½ï¿½ï¿½}ï¿½ï¿½vï¿½s@ï¿½ï¿½ï¿½ï¿½1F
>>>>> =gï¿½ï¿½ï¿½6ï¿½ï¿½ï¿½ï¿½ï¿½Y7=ï¿½&ï¿½ p1ï¿½;ï¿½Îºï¿½ ï¿½ï¿½~=
>>>>> ï¿½Uoï¿½<ï¿½%@ï¿½gï¿½ï¿½ï¿½ï¿½
>>>>> >
>>>>> > ï¿½34ï¿½@Jï¿½ï¿½ï¿½q.k ï¿½ï¿½^ï¿½>ï¿½ ï¿½&}ï¿½ ï¿½-ï¿½ï¿½NÙ¸*ï¿½vï¿½
>>>>> ï¿½ï¿½4 ï¿½ï¿½ï¿½G0Uï¿½ =G@ ï¿½ÜŸ70Qï¿½t zw5ï¿½ï¿½
>>>>> > ï¿½hï¿½Õ½}ï¿½ï¿½ÝŽ+p ï¿½ï¿½ï¿½&ï¿½uï¿½ï¿½ï¿½ï¿½ï¿½1ï¿½ ï¿½I*ï¿½'ï¿½ï¿½
>>>>> !ï¿½$ï¿½ï¿½ ï¿½W='.
>>>> 
>>>>> >
>>>>> > Error: At line #13, Unexpected line: '^' expected, found '.'.
>>>>> >
>>>>> >
>>>>> > Error: At line #14, Unexpected line: '^' expected, found '
>>>>> 2%Ï—Ê‹ï¿½ï¿½ï¿½Sï¿½
>>>>> > ï¿½Tï¿½b:ï¿½ï¿½ï¿½g Jï¿½<ï¿½ï¿½ËŠÆ L ï¿½ï¿½1ï¿½ï¿½ï¿½
>>>>> ï¿½Q)ï¿½(Eï¿½ï¿½`ï¿½ï¿½2ï¿½ï¿½C
>>>>> > ï¿½ Î†Í¡| fï¿½ï¿½ ï¿½ï¿½vï¿½WEï¿½ï¿½ï¿½ï¿½c~ï¿½ ï¿½2ï¿½Nï¿½;ï¿½
>>>>> ï¿½(ï¿½!}ï¿½ï¿½8k ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½ï¿½ kï¿½ ï¿½Gï¿½Â¾_$ ï¿½{q^
>>>>> > ã»Ž]ï¿½eyvï¿½ï¿½ É“|ï¿½ ï¿½XCrï¿½Kï¿½ï¿½>!ï¿½ '.
>>>>> >
>>>>> >
>>>>> > Error: At line #15, Unexpected line: '^' expected, found 'N Njï¿½#bï¿½
>>>>> ï¿½vzï¿½/ï¿½ ï¿½
>>>>> > }ï¿½-&ï¿½ Xï¿½W|ï¿½;ï¿½k;;suUï¿½ ï¿½ï¿½ï¿½ ï¿½ï¿½È´'.
>>>>> >
>>>>> > Error: At line #16, Unexpected line: '^' expected, found 'Dï¿½c@ï¿½ G2i
>>>>> ï¿½ '. 
>>>> 
>>>>> >
>>>>> >
>>>>> > Error: At line #17, Unexpected line: '^' expected, found
>>>>> > 'ï¿½ 
>>>>> ï¿½ï¿½ï¿½á¯’ï¿½EXiï¿½7^zï¿½ï¿½dWcï¿½{-uÚªï¿½kï¿½Lï¿½ï¿½ï¿½1qï¿½ï¿½zKzï¿½H0
>>>>> ï¿½ï¿½ï¿½ ï¿½|Cï¿½ï¿½ ï¿½ ï¿½ï¿½ï¿½ï¿½)ï¿½
>>>>> > ï¿½ï¿½ï¿½ï¿½ï¿½Oï¿½ï¿½*Iï¿½U;Ä¬ï¿½qï¿½Cet'.
>>>> 
>>>>> >
>>>>> > Error: At line #18, Unexpected line: '^' expected, found
>>>>> >
>>>>> > ''ï¿½ iï¿½g ï¿½ï¿½ï¿½Fï¿½ ï¿½ï¿½ï¿½ï¿½Qï¿½gï¿½Ï¥Ë‚ï¿½hï¿½uoW&?&ï¿½ï¿½U
>>>>> ,[zï¿½ï¿½ï¿½ î†ºï¿½ eï¿½(ï¿½8ï¿½!uï¿½"ï¿½ï¿½m -ï¿½@2ï¿½Ã«ï¿½*ï¿½Qï¿½ï¿½ m
>>>>> > ï¿½ï¿½wï¿½ï¿½ï¿½lï¿½;ï¿½ï¿½Zï¿½ï¿½4ï¿½ï¿½Lï¿½ï¿½j&oï¿½Uï¿½ï¿½REï¿½dd
>>>>> ï¿½ï¿½ ï¿½ ï¿½ï¿½R#ï¿½ï¿½ï¿½ ï¿½t~ï¿½ï¿½ ï¿½ï¿½ vÇ·aUÊ½ï¿½ï¿½ï¿½ï¿½ï¿½Éˆj
>>>>> '.
>>>>> >
>>>>> > Error: At line #19, Unexpected line: '^' expected, found '!ï¿½
>>>>> ï¿½,$ï¿½ï¿½
>>>>> >
>>>>> > ï¿½ï¿½O ï¿½ï¿½ ï¿½Ä¶vï¿½ï¿½ï¿½)ï¿½ï¿½
>>>>> > tcï¿½6ï¿½ï¿½{ï¿½= ï¿½ï¿½-_ Oï¿½k9ï¿½ï¿½ï¿½Iï¿½o"ï¿½ï¿½ï¿½X:ï¿½ï¿½ 'ï¿½
>>>>> ï¿½ï¿½ï¿½
>>>>> > 
>>>>> ï¿½ï¿½ï¿½î€¥yÎ’Dï¿½|É·pï¿½6Hï¿½ï¿½ï¿½ï¿½ROï¿½ï¿½_ï¿½Oï¿½Î¶ï¿½2Dï¿½ï¿½ï¿½tJ
>>>>> {ï¿½ï¿½ g
>>>>> > ï¿½ï¿½@H4**ï¿½eï¿½"ï¿½yBï¿½H:ï¿½Ä¼ï¿½ï¿½]ï¿½]ï¿½Ãºï¿½_ï¿½9ï¿½
>>>>> ï¿½|ï¿½Â¶ï¿½F) ï¿½ Mï¿½) Q; ï¿½J-ï¿½0ï¿½ï¿½'.
>>>> 
>>>>> >
>>>>> > Error: At line #20, Unexpected line: '^' expected, found
>>>>> >
>>>>> > '!ï¿½ï¿½(Vï¿½ï¿½ï¿½EIsjï¿½ï¿½ï¿½ &;1ï¿½3ï¿½ï¿½ Kï¿½ï¿½ tï¿½%"L(
>>>>> ï¿½Wï¿½ï¿½3ï¿½ï¿½ï¿½xs cï¿½ ï¿½(
>>>>> > fï¿½ï¿½É¨bm_vkï¿½wï¿½Þ¹ï¿½ï¿½ï¿½ï¿½ï¿½y%ï¿½ï¿½l_ï¿½ ]fï¿½R|
>>>>> > rï¿½;ï¿½ ï¿½cï¿½l]!ï¿½&ï¿½ï¿½qbï¿½ï¿½d |* lï¿½
>>>>> ï¿½Ö¼ï¿½Î­ï¿½ï¿½2zpï¿½-ï¿½ cmï¿½ï¿½[ï¿½ï¿½ï¿½ï¿½`M^ï¿½Qï¿½ [Iï¿½
>>>>> > ï¿½ ^0 $&ï¿½Wï¿½Ñ¶ï¿½ï¿½ #ï¿½mï¿½ï¿½TPï¿½sï¿½_ï¿½Nt ï¿½hï¿½Rq>
>>>>> Aï¿½ï¿½J7ï¿½ï¿½P,|ï¿½Tï¿½w? } ï¿½ï¿½ï¿½ ï¿½ulï¿½ï¿½4
>>>>> >
>>>>> > ï¿½4ï¿½ï¿½;ï¿½P@ï¿½ ï¿½ï¿½, /Õ¤ï¿½6ï¿½ï¿½ï¿½ ï¿½Iï¿½pï¿½Pï¿½ ï¿½L_
>>>>> F)ï¿½5i<ï¿½[ï¿½Ç¤Q×¦ï¿½ï¿½#$ ï¿½fï¿½Ò±ï¿½Y|I YpM 0
>>>>> > VKï¿½ï¿½5ï¿½"%)ï¿½2ï¿½ï¿½4 ï¿½ï¿½YPoï¿½Uï¿½&_
>>>>> ï¿½ï¿½ï¿½.ï¿½@sï¿½ï¿½%ï¿½ï¿½ï¿½\
>>>>> eFhï¿½ï¿½Wï¿½*ï¿½ï¿½Uï¿½^ï¿½ï¿½ï¿½ï¿½U]ï¿½ï¿½Sï¿½ï¿½|ï¿½ hï¿½"Lï¿½ï¿½
>>>>> > $ï¿½Ì»{ï¿½_jï¿½ &ï¿½[.ï¿½i
>>>>> > ï¿½<aï¿½eï¿½ï¿½.ï¿½ï¿½ï¿½ï¿½ï¿½q Ú‰hï¿½cï¿½ï¿½ï¿½ yI g&"U*hPï¿½
>>>>> ï¿½Ý‘ï¿½7ï¿½ï¿½mË ï¿½'.
>>>>> >
>>>>> >
>>>>> > Error: At line #21, Unexpected line: '^' expected, found 'ï¿½Iï¿½*rï¿½
>>>>> ï¿½iÅ¨ï¿½t
>>>>> > ï¿½C[ï¿½ï¿½)ï¿½ï¿½ï¿½ï¿½oï¿½ï¿½1xQ8_ï¿½
>>>>> ï¿½]ï¿½ï¿½ï¿½ï¿½CVï¿½ï¿½ï¿½ï¿½yï¿½ï¿½"j '.
>>>> 
>>>>> >
>>>>> > Error: Maximum message limit exceeded
>>>>> >
>>>>> > Error: No non-empty submittable definitions were found in the
>>>>> >
>>>>> > submission. The submission had 0 empty definitions and 0 references.
>>>>> >
>>>>> > No validation was performed.
>>>>> >
>>>>> > Nothing submitted due to validation errors
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> > ------------------------------------------------------
>>>>> > Pan Du, PhD
>>>>> > Research Assistant Professor
>>>>> > Northwestern University Biomedical Informatics Center
>>>>> > 750 N. Lake Shore Drive, 11-176
>>>>> > Chicago, IL  60611
>>>>> > Office (312) 503-2360; Fax: (312) 503-5388
>>>>> > dupan (at) northwestern.edu <http://northwestern.edu/>
>>>>> > ------------------------------------------------------
>>>>> >
>>>>> >
>>>>> >
>>>> 
>>>>        [[alternative HTML version deleted]]
>>>> 
>>>> 
>>>> _______________________________________________
>>>> Bioconductor mailing list
>>>> Bioconductor@stat.math.ethz.ch
>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>>> Search the archives:
>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>> 
>> 
> 
> 



------------------------------------------------------
Pan Du, PhD
Research Assistant Professor
Northwestern University Biomedical Informatics Center
750 N. Lake Shore Drive, 11-176
Chicago, IL  60611
Office (312) 503-2360; Fax: (312) 503-5388
dupan (at) northwestern.edu
------------------------------------------------------




	[[alternative HTML version deleted]]

