I already read everything. I understand the arguments in the examples,
because it's Affy data. But for two-channel oligo microarray, with dye-swap,
it doesn't fit. That's why I need some help.
I have 4 slides for each time. But I can't call them A_01, A_02, A_03, A_04
and B_01, B_02, B_03, B_04, because A_01 and A_02 are the dye-swap. They are
not independent samples. How can I explain this to the algorithm? I'm a
biologist. It's hard to me. But I'll keep trying.

Thanks,

Priscila

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