Hi all,

I have a question about using lumiR to read in Illumina data.
I have no idea what the error message is about. If you can
suggest sth, that will be great.

Thanks!

Alex

> library(lumi)
> fileName <- 'Ademi_raw_data.txt'
> example.lumi <- lumiR(fileName,columnNameGrepPattern =
list(exprs='AVG_Signal', se.exprs='BEAD_STDEV', detection='Detection',
beadNum='Avg_NBEADS'))
Error in gregexpr("\t", dataLine1) : invalid argument
> sessionInfo()
R version 2.7.0 (2008-04-22)
i686-pc-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] lumi_1.6.3     mgcv_1.4-2     affy_1.14.2    affyio_1.4.1
Biobase_1.14.1
>

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