Hello,

I have used Limma for preprocessing and statistical analysis.  I want to filter my gene list after the statistical analysis but before the FDR is applied.  My analysis generates the table fit2.  The fit2 table has the following headers:

Coefficients
df.residual
sigma
stdev.unscaled
A mean
S2.post
t
p.value
lods
F
F.p.value

Can you explain what the following mean: stdev.unscaled, lods, s2.post, Amean, coefficients and F.p.value mean?

If I wanted to filter out genes by variance what would be the best way to go?

Sally
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