Hi All,

I am in need of some basic 2-color (cDNA) microarray help.

With 3-biological replicates (one of them is a dye-swap), I wish to merge
ONLY the raw intensities of the 3 cDNA files. This merging should take into
account of the dye-swap file too. Finally, it should produce an HTML (or,
CSV) file that contains ONE raw expression against each available gene with
the relevant annotation.

I am not confident as to how I should script it. I did go through some
packages like LIMMA, but couldn't really extract what I wanted, as they
focus mainly on statistics for differential expression.

Thank you !

Cheers,
Santana

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