On Mon, Dec 1, 2008 at 3:42 PM, Hervé Pagès <hpages@fhcrc.org> wrote:

> Background: some CRAN or Bioconductor packages contain native code
> that needs to be compiled and then linked against a system library.
> Some of those libraries are not part of a standard Ubuntu installation
> and need to be installed explicitly (sudo apt-get install
> <somelib>-dev).
>
> In the case of preprocessCore, the output below suggests that it
> needs to be linked against the BLAS and LAPACK libraries. Not sure
> but I think those are part of a default R installation unless R has
> been configured with --with-blas and --with-lapack which might be
> your case.
>
> Not sure what's going on. Just a couple of suggestions:
>
>  - Make sure you have Ubuntu pkg r-base-dev

DONE!

>
>  - Try to install KernSmooth (recommended pkg) from source:
>
>      > install.packages('KernSmooth')
>
>    This will replace the one you got when you installed
>    Ubuntu pkg r-cran-kernsmooth
>    KernSmooth also needs to be linked against BLAS so if
>    this fails then it means something is wrong with your
>    R installation (in that case R-help might be a better place
>    to ask for help).
>
> H.
>
> library()
Packages in library '/usr/local/lib/R/site-library':

affyio Tools for parsing Affymetrix data files
annaffy Annotation tools for Affymetrix biological
  metadata
annotate Annotation for microarrays
AnnotationDbi Annotation Database Interface
Biobase Biobase: Base functions for Bioconductor
DBI R Database Interface
DynDoc Dynamic document tools
genefilter genefilter: methods for filtering genes from
  microarray experiments
geneplotter Grapics related functions for Bioconductor
GO.db A set of annotation maps describing the entire
  Gene Ontology
hgu95av2.db Affymetrix Human Genome U95 Set annotation data
  (chip hgu95av2)
KEGG.db A set of annotation maps for KEGG
limma Linear Models for Microarray Data
marray Exploratory analysis for two-color spotted
  microarray data
multtest Resampling-based multiple hypothesis testing
RColorBrewer ColorBrewer palettes
ROC utilities for ROC, with uarray focus
RSQLite SQLite interface for R
XML Tools for parsing and generating XML within R
  and S-Plus.
xtable Export tables to LaTeX or HTML


Packages in library '/usr/lib/R/library':

base The R Base Package
boot Bootstrap R (S-Plus) Functions (Canty)
class Functions for Classification
cluster Cluster Analysis Extended Rousseeuw et al.
codetools Code Analysis Tools for R
datasets The R Datasets Package
foreign Read Data Stored by Minitab, S, SAS, SPSS,
  Stata, Systat, dBase, ...
graphics The R Graphics Package
grDevices The R Graphics Devices and Support for Colours
  and Fonts
grid The Grid Graphics Package
KernSmooth Functions for kernel smoothing for Wand & Jones
  (1995)
lattice Lattice Graphics
MASS Main Package of Venables and Ripley's MASS
methods Formal Methods and Classes
mgcv GAMs with GCV smoothness estimation and GAMMs
  by REML/PQL
nlme Linear and Nonlinear Mixed Effects Models
nnet Feed-forward Neural Networks and Multinomial
  Log-Linear Models
rpart Recursive Partitioning
spatial Functions for Kriging and Point Pattern
  Analysis
splines Regression Spline Functions and Classes
stats The R Stats Package
stats4 Statistical Functions using S4 Classes
survival Survival analysis, including penalised
  likelihood.
tcltk Tcl/Tk Interface
tools Tools for Package Development
utils The R Utils Package

(END)



> Tiandao Li wrote:
>
>> Thanks, Vincent. I installed XML. However, I still can't install
>> preprocessCore or other standard packages from BioC.
>>
>>  > biocLite("preprocessCore")
>> Running biocinstall version 2.3.9 with R version 2.8.0 Your version of R
>> requires version 2.3 of Bioconductor.
>> Warning in install.packages(pkgs = pkgs, repos = repos, dependencies =
>> dependencies, :
>>  argument 'lib' is missing: using '/usr/local/lib/R/site-library'
>> trying URL '
>> http://bioconductor.org/packages/2.3/bioc/src/contrib/preprocessCore_1.4.0.tar.gz
>> '
>> Content type 'application/x-gzip' length 109921 bytes (107 Kb)
>> opened URL
>> ==================================================
>> downloaded 107 Kb
>>
>> * Installing *source* package 'preprocessCore' ...
>> checking for gcc... gcc
>> checking for C compiler default output file name... a.out
>> checking whether the C compiler works... yes
>> checking whether we are cross compiling... no
>> checking for suffix of executables... checking for suffix of object
>> files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether gcc accepts -g... yes
>> checking for gcc option to accept ISO C89... none needed
>> checking for pthread_create in -lpthread... yes
>> checking if we can use pthreads... yes
>> configure: creating ./config.status
>> config.status: creating src/Makevars
>> ** libs
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c avg.c -o avg.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c avg_log.c -o avg_log.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c biweight.c -o biweight.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c init_package.c -o init_package.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c lm.c -o lm.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c log_avg.c -o log_avg.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c log_median.c -o log_median.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c matrix_functions.c -o matrix_functions.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c median.c -o median.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c median_log.c -o median_log.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c medianpolish.c -o medianpolish.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c plmd.c -o plmd.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c plmr.c -o plmr.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c psi_fns.c -o psi_fns.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c qnorm.c -o qnorm.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c R_colSummarize.c -o R_colSummarize.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c rlm_anova.c -o rlm_anova.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c rlm.c -o rlm.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c rlm_se.c -o rlm_se.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c rma_background4.c -o rma_background4.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c rma_common.c -o rma_common.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c R_plmd_interfaces.c -o R_plmd_interfaces.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c R_plmr_interfaces.c -o R_plmr_interfaces.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c R_rlm_interfaces.c -o R_rlm_interfaces.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c R_subColSummarize.c -o R_subColSummarize.o
>> gcc -std=gnu99 -I/usr/share/R/include -g -O2 -DPACKAGE_NAME=\"\"
>> -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\"
>> -DPACKAGE_BUGREPORT=\"\" -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -fpic -g -O2
>> -c weightedkerneldensity.c -o weightedkerneldensity.o
>> gcc -std=gnu99 -shared -o preprocessCore.so avg.o avg_log.o biweight.o
>> init_package.o lm.o log_avg.o log_median.o matrix_functions.o median.o
>> median_log.o medianpolish.o plmd.o plmr.o psi_fns.o qnorm.o R_colSummarize.o
>> rlm_anova.o rlm.o rlm_se.o rma_background4.o rma_common.o
>> R_plmd_interfaces.o R_plmr_interfaces.o R_rlm_interfaces.o
>> R_subColSummarize.o weightedkerneldensity.o -lpthread -lpthread -lgfortran
>> -lm -llapack -lf77blas -latlas -L/usr/lib/R/lib -lR
>> /usr/bin/ld: cannot find -lf77blas
>> collect2: ld returned 1 exit status
>> make: *** [preprocessCore.so] Error 1
>> chmod: cannot access
>> `/usr/local/lib/R/site-library/preprocessCore/libs/*': No such file or
>> directory
>> ERROR: compilation failed for package 'preprocessCore'
>> ** Removing '/usr/local/lib/R/site-library/preprocessCore'
>>
>> The downloaded packages are in
>>  /tmp/RtmpqCLrkQ/downloaded_packages
>> Warning message:
>> In install.packages(pkgs = pkgs, repos = repos, dependencies =
>> dependencies, :
>>  installation of package 'preprocessCore' had non-zero exit status
>>  >
>>
>>
>> On Mon, Dec 1, 2008 at 2:34 PM, Vincent Goulet <
>> vincent.goulet@act.ulaval.ca <mailto:vincent.goulet@act.ulaval.ca>>
>> wrote:
>>
>>    Tiandao,
>>
>>    According to
>>
>>           http://packages.ubuntu.com/
>>
>>    the file xml2-config is in the Ubuntu package libxml2-dev. I'd try
>>    installing this package and then retry installing XML.
>>
>>    HTH    Vincent
>>
>>    Le lun. 1 déc. à 15:53, Tiandao Li a écrit :
>>
>>        I always followed http://cran.r-project.org/bin/linux/ubuntu/ to
>>        install R
>>        on Ubuntu 8.1. I had no errors before!
>>
>>            install.packages("XML")
>>
>>        Warning in install.packages("XML") :
>>         argument 'lib' is missing: using '/usr/local/lib/R/site-library'
>>        --- Please select a CRAN mirror for use in this session ---
>>        Loading Tcl/Tk interface ... done
>>        trying URL 'http://cran.fhcrc.org/src/contrib/XML_1.98-1.tar.gz'
>>        Content type 'application/x-gzip' length 648274 bytes (633 Kb)
>>        opened URL
>>        ==================================================
>>        downloaded 633 Kb
>>
>>        * Installing *source* package 'XML' ...
>>        checking for gcc... gcc
>>        checking for C compiler default output file name... a.out
>>        checking whether the C compiler works... yes
>>        checking whether we are cross compiling... no
>>        checking for suffix of executables...
>>        checking for suffix of object files... o
>>        checking whether we are using the GNU C compiler... yes
>>        checking whether gcc accepts -g... yes
>>        checking for gcc option to accept ANSI C... none needed
>>        checking how to run the C preprocessor... gcc -E
>>        checking for sed... /bin/sed
>>        checking for xml2-config... no
>>        Cannot find xml2-config
>>        ERROR: configuration failed for package 'XML'
>>        ** Removing '/usr/local/lib/R/site-library/XML'
>>
>>        The downloaded packages are in
>>        /tmp/RtmpqCLrkQ/downloaded_packages
>>        Warning message:
>>        In install.packages("XML") :
>>         installation of package 'XML' had non-zero exit status
>>
>>
>>
>>
>>
>>        On Mon, Dec 1, 2008 at 1:42 PM, Hervé Pagès <hpages@fhcrc.org
>>        <mailto:hpages@fhcrc.org>> wrote:
>>
>>            Hi Tiandao,
>>
>>            What OS do you have? How did you install R? It looks like
>>            you cannot
>>            install an R package with native code at all. Please try
>>
>>                install.packages("XML")
>>
>>
>>            and show us the complete output.
>>            You could also try the R-help mailing list
>>            (r-help@r-project.org <mailto:r-help@r-project.org>)
>>            since your problem doesn't seem to be Bioconductor-specific.
>>
>>            Cheers,
>>            H.
>>
>>
>>            Tiandao Li wrote:
>>
>>                Hello,
>>
>>                I tried to install BioC 2.3 on a new laptop (HP AMD
>>                Turion x2). However I
>>                constantly had the following warnings, I tried several
>>                times for the last
>>                few days. I never had this kind of errors before.
>>
>>                sudo R
>>
>>                source("http://bioconductor.org/biocLite.R")
>>
>>
>>
>>                biocLite()
>>
>>
>>
>>                warnings()
>>
>>
>>                Warning messages:
>>                1: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'Matrix' had non-zero exit status
>>                2: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'preprocessCore' had non-zero
>>                exit status
>>                3: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'IRanges' had non-zero exit status
>>                4: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'affy' had non-zero exit status
>>                5: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'affydata' had non-zero exit status
>>                6: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'Biostrings' had non-zero exit
>>                status
>>                7: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'matchprobes' had non-zero exit
>>                status
>>                8: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'vsn' had non-zero exit status
>>                9: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'gcrma' had non-zero exit status
>>                10: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'simpleaffy' had non-zero exit
>>                status
>>                11: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'affyPLM' had non-zero exit status
>>                12: In install.packages(pkgs = pkgs, repos = repos,
>>                dependencies =
>>                dependencies, ... :
>>                installation of package 'affyQCReport' had non-zero exit
>>                status
>>
>>                sessionInfo()
>>
>>
>>                R version 2.8.0 (2008-10-20)
>>                i486-pc-linux-gnu
>>
>>                locale:
>>
>>
>>  LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>>
>>                attached base packages:
>>                [1] stats graphics grDevices utils datasets methods base
>>
>>                loaded via a namespace (and not attached):
>>                [1] tcltk_2.8.0 tools_2.8.0
>>
>>                     [[alternative HTML version deleted]]
>>
>>                _______________________________________________
>>                Bioconductor mailing list
>>                Bioconductor@stat.math.ethz.ch
>>                <mailto:Bioconductor@stat.math.ethz.ch>
>>                https://stat.ethz.ch/mailman/listinfo/bioconductor
>>                Search the archives:
>>
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>
>>
>>            --
>>            Hervé Pagès
>>
>>            Program in Computational Biology
>>            Division of Public Health Sciences
>>            Fred Hutchinson Cancer Research Center
>>            1100 Fairview Ave. N, M2-B876
>>            P.O. Box 19024
>>            Seattle, WA 98109-1024
>>
>>            E-mail: hpages@fhcrc.org <mailto:hpages@fhcrc.org>
>>            Phone:  (206) 667-5791
>>            Fax:    (206) 667-1319
>>
>>
>>               [[alternative HTML version deleted]]
>>
>>        ______________________________________________
>>        R-help@r-project.org <mailto:R-help@r-project.org> mailing list
>>        https://stat.ethz.ch/mailman/listinfo/r-help
>>        PLEASE do read the posting guide
>>        http://www.R-project.org/posting-guide.html
>>        and provide commented, minimal, self-contained, reproducible code.
>>
>>
>>
>>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M2-B876
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages@fhcrc.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
>

	[[alternative HTML version deleted]]

