Hello,

I tried to install BioC 2.3 on a new laptop (HP AMD Turion x2). However I
constantly had the following warnings, I tried several times for the last
few days. I never had this kind of errors before.

sudo R

> source("http://bioconductor.org/biocLite.R")

> biocLite()

> warnings()
Warning messages:
1: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'Matrix' had non-zero exit status
2: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'preprocessCore' had non-zero exit status
3: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'IRanges' had non-zero exit status
4: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'affy' had non-zero exit status
5: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'affydata' had non-zero exit status
6: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'Biostrings' had non-zero exit status
7: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'matchprobes' had non-zero exit status
8: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'vsn' had non-zero exit status
9: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'gcrma' had non-zero exit status
10: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'simpleaffy' had non-zero exit status
11: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'affyPLM' had non-zero exit status
12: In install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies, ... :
  installation of package 'affyQCReport' had non-zero exit status

> sessionInfo()
R version 2.8.0 (2008-10-20)
i486-pc-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached):
[1] tcltk_2.8.0 tools_2.8.0
>

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