I'm using a specific Affy chipset that is supported by BioC (rat2302) and
would like to use GSEAlm to indentify GO genesets of interest (p <0.05). I
am only interested in the GO BP ontology and only want to use the terminal
leaves. What is the most straightforward way to achieve this? I've read the
vignettes from GSEABase, GSEAlm, Category, and goTools and can't find a
direct example. I suspect I am making this too hard. Suggestions? Point me
in the correct direction?

Thanks,
Mark
------------------------------------------------------------
Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine

15032 Hunter Court, Westfield, IN  46074

(317) 490-5129 Work, & Mobile & VoiceMail
(317) 399-1219  Home
Skype:  mkimpel

"The real problem is not whether machines think but whether men do." -- B.
F. Skinner
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