Thanks Guido, I haven't seen that thread, it is indeed the very same
problem, and a fix is obviously on the way...

Sorry!

Best, Sam

2008/11/4 Hooiveld, Guido <Guido.Hooiveld@wur.nl>

>
> Hi,
> I think this is related to this thread:
> http://article.gmane.org/gmane.science.biology.informatics.conductor/20483
>
> G
>
>
>
> > -----Original Message-----
> > From: bioconductor-bounces@stat.math.ethz.ch
> > [mailto:bioconductor-bounces@stat.math.ethz.ch] On Behalf Of
> > Samuel Wuest
> > Sent: 04 November 2008 12:37
> > To: bioconductor@stat.math.ethz.ch
> > Subject: [BioC] AnnotationDbi- Problem loading new
> > Arabdiopsis annotationpackage
> >
> > Hi all,
> >
> > I have just installed R version 2.8.0 and the updated to the
> > new Bioconductor-version 2.3 packages. I have used SQLForge
> > to create a new annotation package for the Arabidopsis Chip
> > (using a custom-made annotation package); I have successfully
> > installed the new package, but the loading requires a
> > chrlengths-table, which does not exist for the Arabidopsis
> > base-level annotation database (as discussed in the thread
> > "Arabidopsis chromosome location mappings").
> >
> > So I got the following error:
> > >library(TinesATH1b.db)
> >
> > Loading required package: DBI
> > Error in sqliteExecStatement(con, statement, bind.data) :
> >   RS-DBI driver: (error in statement: no such table:
> > chrlengths) Error : .onLoad failed in 'loadNamespace' for
> > 'TinesATH1b.db'
> > Error: package/namespace load failed for 'TinesATH1b.db'
> > Is there a way around the problem? Or is it necessary to
> > include a chrlengths-annotation in the Arabidopsis base-level
> > package? Or is the error not really related to the missing
> > chrlengths-table?
> >
> > Thanks a million for further help!
> >
> > Best wishes, Sam
> >
> > > sessionInfo()
> > R version 2.8.0 (2008-10-20)
> > i386-apple-darwin8.11.1
> >
> > locale:
> > en_IE.UTF-8/en_IE.UTF-8/C/C/en_IE.UTF-8/en_IE.UTF-8
> >
> > attached base packages:
> > [1] tools     stats     graphics  grDevices utils
> > datasets  methods
> > base
> >
> > other attached packages:
> > [1] RSQLite_0.7-1       DBI_0.2-4           AnnotationDbi_1.4.0
> > Biobase_2.2.0
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
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> > Bioconductor@stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > Search the archives:
> > http://news.gmane.org/gmane.science.biology.informatics.conductor
> >
> >
>
>
>

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