On Mon, Nov 3, 2008 at 11:10 AM, Groot, Philip de <philip.degroot@wur.nl>wrote:

> Hello all,
>
> I created an arabidopsis library based on the MBNI custom CDF version 10
> (TAIR), see http://nugo-r.bioinformatics.nl/NuGO_R.html. In BioC 2.2 all
> works very well. However, when trying to load the package in R-2.8.0/BioC
> 2.3, I get the following error message:
>
> > library(ath1attair.db)
> Loading required package: DBI
> Error in sqliteExecStatement(con, statement, bind.data) :
>  RS-DBI driver: (error in statement: no such table: chrlengths)
> Error : .onLoad failed in 'loadNamespace' for 'ath1attair.db'
> Error: package/namespace load failed for 'ath1attair.db'
>
>
> Rebuilding the library with the "makeARABIDOPSISCHIP_DB" function did not
> solve the problem. The library installs without error message, but fails to
> load.
>
> The error message is obvious (no chrlengths table), but how can I solve
> this problem?
>

Hi, Philip.  I think you will need to include your sessionInfo() so that
folks can see versions of AnnotationDbi, RSQLite, etc.

Sean

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