Hi all, 

 

I have check some useful packages to plot gene chromosome information like
gene plotter, ideogram and GenomeGraphs.

However, I don't know how to plot microRNA (miRNA) chromosome location. 

I would like to see the distribution of some miRNAs in the genome.

 

I have known the miRNA chromosome info. 

miRNA name           chromosome           start           end

hsa-miR-130b            22                             20337592     20337673

hsa-miR-33a              22                             40626894
40626962

hsa-miR-15b              3                              161605069
161605166

.

 

Is there any packages that I provide the location and plotting it out?

Thank you.

 

Sincerely,

Camper

 

==================================================

Camper Chih-Wei Liu

National Cheng Kung University, Tainan, Taiwan

Department of Computer Science and Information Engineering

Intelligent Information Retrieval Lab: IIR Lab 

camper@cad.csie.ncku.edu.tw

 


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