Thank you, Marc!

Best,
     Allen


On Thu, Jul 10, 2008 at 11:23 AM, Marc Carlson <mcarlson@fhcrc.org> wrote:

> Hi Allen,
>
> In that case you can just use the RefSeq IDs to make a custom package for
> your platform of choice using the SQLForge code inside of the AnnotationDbi
> package.
> You can find out more here:
>
> http://www.bioconductor.org/packages/2.3/bioc/html/AnnotationDbi.html
>
> Let me know if you need more information,
>
>
>   Marc
>
>
>
> ss wrote:
>
>> Dear all,
>>
>> Hi! I have a question about using the function 'hyperGTest' in
>> GOstatsHyperG.
>> What if I want to find the enriched GO terms based on a set of genes which
>> I
>> only know gene symbol, Ensembl Gene ID, and RefSeq ID. Since the array
>> is customized and I don't find the corresponding 'annotation' package in
>> Bioconductor.
>>
>> In other words, when making the:
>>
>> params <- new(...,geneIds, annotation,...), would it possible for me to
>> pass
>> "gene symbol"
>> or "Ensembl Gene ID", or "RefSeq ID" to "geneIds" and ignore "annotation"
>> etc.?
>>
>> Thanks much!
>>
>> Allen
>>
>>        [[alternative HTML version deleted]]
>>
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>>
>>
>>
>
>

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