Hi everyone,

I forgot to attach the format of my gpr files. Here are the first few lines
of my gpr files.

 ATF 1
















































































 21 82
















































































 Type=GenePix Results 2















































































 DateTime=2008/05/31 12:02:37














































































 Settings=Easy Quant















































































 GalFile=C:\Documents and Settings\Administrator\Desktop\stanford chip
data\hov172.gal







































































 Scanner=Model: ProScanArray Serial No.:XXXXX













































































 Comment=<F1>Cyanine 3<F2>Cyanine 5<F1 Offset>0,0<F2 Offset>-1,0<Comment>










































































 PixelSize=10
















































































 Wavelengths=543 nm 633 nm















































































 ImageFiles=C:\Documents and Settings\Administrator\Desktop\stanford chip
data\Cyanine 3 42 30-5-08 [3].tif C:\Documents and
Settings\Administrator\Desktop\stanford chip data\Cyanine 5 48 30-5-08
[4].tif


























































 PMTGain=42 48
















































































 NormalizationMethod=LOWESS














































































 NormalizationFactors=0.000 0.000














































































 JpegImage=
















































































 RatioFormulations=W2/W1(635/532)














































































 Barcode=

















































































 ImageOrigin=1329 5869















































































 JpegOrigin=0 0
















































































 Creator=ScanArray Express, Microarray Analysis System 4.0.0.4











































































 Temperature=0.0
















































































 LaserPower=90 90 0 0















































































 LaserOnTime=0 0 0 0















































































 Block Column Row Name ID X Y Dia. F532 Median F532 Mean F532 SD B532
Median B532
Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. F635 Median F635 Mean F635
SD B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F3
Median F3 Mean F3 SD B3 Median B3 Mean B3 SD % > B3+1SD % > B3+2SD F3 % Sat. F4
Median F4 Mean F4 SD B4 Median B4 Mean B4 SD % > B4+1SD % > B4+2SD F4
% Sat. Ratio
of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean
of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R²
(635/532) Ratio
of Medians (Ratio/2) Ratio of Means (Ratio/2) Median of Ratios (Ratio/2) Mean
of Ratios (Ratio/2) Ratios SD (Ratio/2) Rgn Ratio (Ratio/2) Rgn R²
(Ratio/2) Ratio
of Medians (Ratio/3) Ratio of Means (Ratio/3) Median of Ratios (Ratio/3) Mean
of Ratios (Ratio/3) Ratios SD (Ratio/3) Rgn Ratio (Ratio/3) Rgn R² (Ratio/3) F
Pixels B Pixels Sum of Medians Sum of Means Log Ratio (635/532) Log Ratio
(Ratio/2) Log Ratio (Ratio/3) F532 Median - B532 F635 Median - B635 F3
Median - B3 F4 Median - B4 F532 Mean - B532 F635 Mean - B635 F3 Mean - B3 F4
Mean - B4 Flags Normalize  1 1 1 Actin, beta ACTB 2424 7574 120 1751 1632
403 323 324 8 100 100 0 1743 1611 388 324 324 11 100 100 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0.994 0.983 0.989 1.254 1.254 0.597 0.384 0 0 0 0 0 0 0 0
0 0 0 0 0 0 88 86 2847 2596 -0.009 0 0 1428 1419 0 0 1309 1287 0 0 100 1
 1 2 1 Actin, beta ACTB 2574 7569 110 1895 1807 306 324 327 9 100 100 0 1777
1684 316 322 326 12 100 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.926
0.918 0.927 1.024 1.024 0.372 0.129 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 75 3026
2845 -0.111 0 0 1571 1455 0 0 1483 1362 0 0 100 1
 1 3 1 Ribosomal protein L13a RPL13A 2724 7564 120 5662 5125 1491 330 335 16
100 100 0 3592 3281 924 326 329 17 100 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0.613 0.616 0.617 0.705 0.705 0.426 0.472 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88
86 8598 7750 -0.707 0 0 5332 3266 0 0 4795 2955 0 0 100 1

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