Hi,

I have inherited a set of single-dye (R) gpr, and need to process them via
limma. After several tries, managed to load via read.maimages and
backgroundCorrect using dummies values for G and Gb from R and Rb,
respectively. Two questions:

A) Am I right to say that normalizeWithinArrays for single-dye gpr ?
B) How to normalize between arrays in the right way ? Should it
be normalizeBetweenArrays(RG, method="quantile")  or
normalizeBetweenArrays(RG$R, method="quantile") or something else ?

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