Hi all,
We've been using Agilent Scanner and Feature Extraction from Agilent.

I'm wondering if there's a way to import these data into limma. Out of the
three required input files (GAL file, Targets file, Spot-type file), we only
have GAL file. FE gives us SHP file and a txt file witn compiled list of
probes and its reading. We are doing 2 color microarray btw.

If you know any detail, please help us.

Also, is it possible to group a certain probes together as one entity (they
are expected to have the same result)? And is it possible to give a set of
probes as normalizing set for limma (set ratio to 1-1)?

I've been looking through the manual but could not find any reference about
Agilent output file.

Thanks all

-- 
Regards,
Anh Tran

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