I've mostly solved my previous problem with samr (an issue with datatypes). However I now have the following problem. Whilst I can generate a sam.object and compute a delta table I cannot get samr to generate a list of significant genes.

The samr.compute.siggenes.table fails with:

Error in dimnames(res.up) = temp.names : 
  length of 'dimnames' [2] not equal to array extent

This is after quantitative analysis.

Can anyone help with this?

Thanks

Iain

> sessionInfo()
R version 2.6.2 (2008-02-08) 
i486-pc-linux-gnu 

locale:
LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] samr_1.25    impute_1.0-5

loaded via a namespace (and not attached):
[1] rcompgen_0.1-17


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