Hi,
 
Can somebody advice in building GOALLENTREZID {GO}
 
'GO' package description tells:
The annotation package was built using a downloadable R package -
AnnBuilder (download and build your own) from www.bioconductor.org
<http://www.bioconductor.org/>  using the following public data sources:
Entrez Gene:ftp://ftp.ncbi.nlm.nih.gov/gene/DATA. Built: Source data
downloaded from Entrez Gene on Wed Aug 29 09:09:16 2007
 
Gene
Ontology:ftp://ftp.geneontology.org/pub/go/godatabase/archive/latest.
Built: Build Information not available 
 
 
AnnBuilder function:
GOPkgBuilder(pkgName, pkgPath, filename, version, author, lazyLoad=TRUE)
requires the GO ontology structure file (filename argument) 
But how does it get Entrez mapping?
 
 
Kind of related question, is the GO package supposed to be updated. I
see the old package version number in the Bioconductor development
version
 
 
Thanks
Vlad
 
 
 
 

Vladimir Morozov 

ALS Therapy Development Institute 

215 First Street, Cambridge MA, 02142 


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