Again:

Dear list,

I'm yet struggling to deal with multiple (3 nos.) gal files.

In the meanwhile, I've come across a communication (
https://stat.ethz.ch/pipermail/bioconductor/2007-September/019105.html)
where Gordon Smyth advised with regards to LIMMA. I'm wondering if any
package/method/way is available by now that addresses the issues of multiple
gal files in an efficient and simpler way.

Else, I'm keen to know (with regards to the above link) :

using LIMMA, if MA1, MA2 and MA3 does NOT necessary contain the same genes (
i.e., there may be addition of other genes too, with their unique IDs) and
NOT necessarily they are of the same length, then how one should proceed
from there (windows system) ! Being new to the area, I would appreciate if
you could elaborate a bit [it would again perhaps help others too in similar
situation as I've dug out an old correspondence and am referring to it now :)
].

Cheers,

Christina

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