dear list:

I finished a LIMMA analysis for two color Agilent 4x44 arrays. I found 800
genes (my choice of fold change under -2 and over +2) at 5%FDR.

I have 30 normal(cy3) and cancer (cy5) samples (paired design).

how can I do clustering and make heatmap after getting significant genes
(eBayes(lmfit) step).

Appreciate your help.  thanks
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