If you are asking about how to map your proteins to the InterPro  
database, I don't know the absolute answer but I highly doubt any  
BioC package is able to do it. Such mapping is extremely  
computationally intensive.

InterProScan, a bioinformatics tool from EBI that is exactly for this  
purpose, is available at:

http://www.ebi.ac.uk/InterProScan/

Best,


On Mar 16, 2008, at 6:09 PM, Anguraj Sadanandam wrote:

> Hi Group,
>
>   Is there a package for querying InterPro database for protein  
> domains?
>
> Thanks,
>
> Anguraj
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/ 
> gmane.science.biology.informatics.conductor
>

Yong Yin, Ph.D.

Senior Scientist
Genome Sequencing Center
Washington University School of Medicine, Campus box 8501
4444 Forest Park
Saint Louis, MO 63108

Tel: (314) 286-1415



	[[alternative HTML version deleted]]

