Hi Christos,

Thanks for the link. Unfortunately, I have to do this for several microarrays, and a manual process may not be quite right.

Even just a table/file mapping the clone ID to gene name/gene symbol etc. would do, but so far I have been unable to find one on the web (or on bioconductor).

It does seem slightly odd that for a database like the SMD, such a mapping is not readily available. Or perhaps, it's a reflection on my modest searching skills!

thanks!



----- Original Message ----
From: Christos Hatzis <christos.hatzis@nuverabio.com>
To: Tim Smith <tim_smith_666@yahoo.com>; bioc <bioconductor@stat.math.ethz.ch>
Sent: Friday, February 8, 2008 1:52:29 PM
Subject: RE: [BioC] Mapping Clone ID to GO terms


I 
don't 
know 
if 
this 
is 
doable 
within 
Bioconductor, 
but 
if 
a 
more 
manual
process 
is 
acceptable, 
Stanford's 
Source 
database 
does 
map 
Clone 
IDs 
to 
gene
ids, 
which 
can 
help 
with 
that 
process. 

http://genome-www5.stanford.edu/cgi-bin/source/sourceSearch 

-Christos

> 
-----Original 
Message-----
> 
From: 
bioconductor-bounces@stat.math.ethz.ch 
> 
[mailto:bioconductor-bounces@stat.math.ethz.ch] 
On 
Behalf 
Of 
Tim 
Smith
> 
Sent: 
Friday, 
February 
08, 
2008 
1:34 
PM
> 
To: 
bioc
> 
Subject: 
[BioC] 
Mapping 
Clone 
ID 
to 
GO 
terms
> 
> 
Hi,
> 
> 
Is 
there 
any 
package 
in 
bioconductor 
that 
would 
help 
me 
map 
> 
clone 
ids 
to 
GO 
terms?
> 
> 
thanks!
> 
> 
> 
> 
>  
  
  
 
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