
Hi Dear BioC,
 
The plotHist and plotDeg worked well before, however, they gave me some error messages today.  I reinstall the R-2.6.1 and BioConductor and the errors stay the same.
 
Any suggestions?
 
Many thanks,
 
Jason
 
# ----------------------
> plotDeg(celData)
Error in UseMethod("as.double") : no applicable method for "as.double"
In addition: Warning message:
':::' is deprecated.
'methods' is deprecated.
'seemsS4Object' is deprecated.
Use 'isS4' instead.
See help("Deprecated") 
 
> plotHist(celData)
Error in checkSlotAssignment(object, name, value) : 
  ".Data" is not a slot in class "matrix"
In addition: Warning message:
In par(op) : calling par(new=) with no plot
 
> sessionInfo()
R version 2.6.1 (2007-11-26) 
i386-pc-mingw32 
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] splines   tools     stats     graphics  grDevices utils     datasets  methods   base     
other attached packages:
 [1] hgu133plus2cdf_1.16.0 affycoretools_1.10.2  annaffy_1.10.1        gcrma_2.10.0         
 [5] matchprobes_1.10.0    biomaRt_1.10.1        RCurl_0.8-0           XML_1.7-1            
 [9] GOstats_2.2.6         Category_2.2.3        Matrix_0.99875-1      lattice_0.17-2       
[13] genefilter_1.16.0     survival_2.34         KEGG_1.16.1           RBGL_1.12.0          
[17] annotate_1.16.1       xtable_1.5-2          AnnotationDbi_1.0.6   RSQLite_0.6-4        
[21] DBI_0.2-4             GO_1.16.0             graph_1.14.2          limma_2.12.0         
[25] affy_1.16.0           preprocessCore_1.0.0  affyio_1.6.1          Biobase_1.16.1       
loaded via a namespace (and not attached):
[1] cluster_1.11.9 grid_2.6.1  
 
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GLM_CPC_VideoChat_distantfamily_012008
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