Hello All,
I experience a problen when trying to build PDInfo Package for an
Affymetrix snp 5.0  array using pdInfoBuilder.
Below are my commands, thanks a lot for your assistance in advance!
Best Wishes,
Sergii
 
library("pdInfoBuilder")
cdfFile <- "GenomeWideSNP_5.r2.cdf"
csvAnno <- "GenomeWideSNP_5.na24.annot.csv"
csvSeq <- "GenomeWideSNP_5.probe_tab"
pkg <- new("AffySNPPDInfoPkgSeed", version = "0.1.5",author = "Seth
Falcon", email = "sergii.ivakhno@cancer.org.uk",+
biocViews = "AnnotationData", genomebuild = "NCBI Build 35, May
2004",cdfFile = cdfFile, csvAnnoFile = csvAnno,csvSeqFile = csvSeq)

> makePdInfoPackage(pkg, destDir = ".")
Creating package in ./pd.genomewidesnp.5 
Error in sqliteExecStatement(conn, statement, bind.data, ...) : 
        RS-DBI driver: (incomplete data binding: expected 7 parameters,
got 0)
In addition: Warning message:
ignoring zero-row bind.data in: sqliteExecStatement(conn, statement,
bind.data, ...) 
Timing stopped at: 8.97 0.25 9.22 NA NA 

 
 
 
 
 
 
 sessionInfo()
R version 2.5.1 (2007-06-27) 
i386-pc-mingw32 
 
locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
Kingdom.1252;LC_MONETARY=English_United
Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
 
attached base packages:
[1] "splines"   "tools"     "stats"     "graphics"  "grDevices" "utils"
"datasets"  "methods"   "base"     
 
other attached packages:
        pdInfoBuilder                 oligo BufferedMatrixMethods
BufferedMatrix                affyio            affxparser
RSQLite                   DBI               Biobase 
              "1.0.0"             "1.0.2-3"               "1.0.0"
"1.0.1"               "1.4.0"               "1.8.3"
"0.5-6"               "0.2-4"              "1.14.0" 

 
 
 
 
 
***********************************************
Sergii Ivakhno, PhD student
Computational Biology Group
Department of Oncology, University of Cambridge
Cancer Research UK Cambridge Research Institute
Li Ka Shing Centre
Robinson Way
Cambridge CB2 0RE
UNITED KINGDOM
Tel: +44 1223 404293
Fax: +44 1223 404208
E-mail: Sergii.Ivakhno@cancerresearchuk.org

https://web.mit.edu/ivakhno/www/  
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