Dear All,

I am getting a following error message when I tried to use gcrma package for
a custom design affymetrix genechip.

I made a nugohs1a520180cdf (custom Affymetrix chip) package using makecdfenv
and also a nugohs1a520180cdfprobe package using matchprobes.

>micro_data = ReadAffy()

> micro_data@cdfName = "nugohs1a520180"

>gcrma(micro_data)

Adjusting for optical
effect..............................................................................Done.

Computing affinities.Done.

Adjusting for non-specific binding.Error in pms[, i] <- GSB.adj(Yin = pms[,
i], subset = index.affinities, :

number of items to replace is not a multiple of replacement length


sessionInfo()

R version 2.6.0 (2007-10-03)

x86_64-unknown-linux-gnu

other attached packages:

gcrma_2.11.1 matchprobes_1.10.0

affy_1.16.0 preprocessCore_1.0.0

affyio_1.6.1 Biobase_1.16.2


 I really appreciate your expert help in this matter.

Thanks,

Best regards,

Hemang

	[[alternative HTML version deleted]]

