Hi

I have got an error when I am using ABarray:

> eset=ABarray("data.txt", "Heidi_desing.txt", "sampleOrigin") 
Using arrayName to match experiment with signal in file: data.txt 
The sample names are:
[1] "1" "2" "3" "4" "5" "6"
AssayNames in dataFile: data.txt 
 [1] "HA004J2_1A_1" "HA004J7_1A_2" "HA004JB_1A_3" "HA004JD_1B_1" "HA004JI_1B_2" "HA004JK_1B_3" "HA004JN_2A_1" "HA004JO_2A_2" "HA004JP_2A_3" "HA004JS_2B_1" "HA004JT_2B_2" "HA004JU_2B_3"

The following arrays were excluded from analysis:
[1] "HA004JN_2A_1" "HA004JO_2A_2" "HA004JP_2A_3" "HA004JS_2B_1" "HA004JT_2B_2" "HA004JU_2B_3"
Reading data from data.txt ......
    This may take several minutes....
Finished data reading.
The results will be in the folder: Result_sampleOrigin/ 
[1] "Creating plot for Signal Hybridization_Control ..."
[1] "Creating plot for Signal Negative_Control ..."
[1] "Creating plot for Signal IVT_Kit_Control_BIOB ..."
[1] "Creating plot for Signal IVT_Kit_Control_BIOC ..."
[1] "Creating plot for Signal IVT_Kit_Control_BIOD ..."
[1] "Creating plot for Signal RT_Kit_Control_DAP ..."
[1] "Creating plot for Signal RT_Kit_Control_LYS ..."
[1] "Creating plot for Signal RT_Kit_Control_PHE ..."

Perform basic analysis for non-normalized data ...
[1] "Creating barplot for probes detectable ... QC_DetectableProbeSN3"
Error in is.null(x) || all.equal(x, y, check.attr = FALSE) : 
  invalid 'y' type in 'x || y'




I have seen that others have had the same error but could not find a reply to that e-mail. Does any one know what might be wrong? (I also get the same error using R 2.5.1)


R version 2.6.0 (2007-10-03) 
i386-pc-mingw32 

locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United Kingdom.1252;LC_MONETARY=English_United Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252

attached base packages:
 [1] tcltk     splines   tools     stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ABarray_1.6.0   multtest_1.18.0 survival_2.34   Biobase_1.16.1 


Regards,
Ingrid



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