Hi, Robert:
Thanks for that advice. I did report it before and kindly reminded Brian
here. But next time, I will describe that too.

Best,

Weiwei

On Dec 6, 2007 1:56 AM, Robert Gentleman <rgentlem@fhcrc.org> wrote:

> Hi,
>
> Weiwei Shi wrote:
> > Hi, Brian:
> > I personally recommend you to use its desktop version instead of R
> version
> > of GSEA from the Broad. I happened to have some bugs when I used its R
> > version before. The only thing you need to do is do some input/output
> > conversion.
>
>   It would be of more use to most probably everyone to report bugs in
> an accurate and helpful way, rather than these sort of vague negative
> comments.  If there really are bugs, I am pretty sure the developer
> would like to know about them
>
>   best wishes
>     Robert
>
>
> >
> > Again, just2cent,
> >
> > Weiwei
> >
> > On Dec 5, 2007 2:33 PM, <Brian_Hare@vrtx.com> wrote:
> >
> >>  Are there any detailed instructions available (e.g. vignettes) for how
> to
> >> do GSEA on
> >>  the Broad collection of pathways in Bioconductor?  I see bits and
> peices
> >> - e.g. GSEAbase,
> >>  geneSetTest(limma) - but haven't seen it all put together - thanks
> >>
> >> _______________________________________________
> >> Bioconductor mailing list
> >> Bioconductor@stat.math.ethz.ch
> >> https://stat.ethz.ch/mailman/listinfo/bioconductor
> >> Search the archives:
> >> http://news.gmane.org/gmane.science.biology.informatics.conductor
> >>
> >
> >
> >
>
> --
> Robert Gentleman, PhD
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M2-B876
> PO Box 19024
> Seattle, Washington 98109-1024
> 206-667-7700
> rgentlem@fhcrc.org
>



-- 
Weiwei Shi, Ph.D
Research Scientist
GeneGO, Inc.

"Did you always know?"
"No, I did not. But I believed..."
---Matrix III

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