Hi, Brian:
I personally recommend you to use its desktop version instead of R version
of GSEA from the Broad. I happened to have some bugs when I used its R
version before. The only thing you need to do is do some input/output
conversion.

Again, just2cent,

Weiwei

On Dec 5, 2007 2:33 PM, <Brian_Hare@vrtx.com> wrote:

>  Are there any detailed instructions available (e.g. vignettes) for how to
> do GSEA on
>  the Broad collection of pathways in Bioconductor?  I see bits and peices
> - e.g. GSEAbase,
>  geneSetTest(limma) - but haven't seen it all put together - thanks
>
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>



-- 
Weiwei Shi, Ph.D
Research Scientist
GeneGO, Inc.

"Did you always know?"
"No, I did not. But I believed..."
---Matrix III

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