Hello,

I have a question about GO annotations. I am trying to use the GOSim package
to explore functional similarities between genes. I am working with the
bacterial species Streptomcyes coelicolor. I cannot retrieve the GO
annotations for the genes using the command - getGOInfo (The command returns
an empty list). GOSim uses the GO package to retrieve the annotations of
genes using Entrez gene IDs. 

The GO annotations for this organism are available on Sanger website
(http://streptomyces.org.uk/GO/index.html). 

Is there a way to link the Entrez gene IDs of this organism to the GOs?

 

Thank you,

Salim

 

 

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Salim Charaniya

PhD candidate

Department of Chemical Engineering and Materials Science

University of Minnesota, Minneapolis

Email: salim@cems.umn.edu

Phone: (612) 625-3051

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