geneSetTest might be more suitable specially when you have small number of
arrays.

Di



On Nov 30, 2007 12:11 PM, Srinivas Iyyer <srini_iyyer_bio@yahoo.com> wrote:

> Dear Group,
>
>
> does limma provide gene set enrichment through a
> wilcoxon rank sum test?
>
> I overheard someone discussing that enrichment scores
> provided through this method (limma - wilcoxon rank
> sum) are better than GSEA enrichment scores.
>
> I see some old 2005 tutorials usings Dr. Smiths gene
> set test.
>
> I am finding difficult to find any vignette that
> discuss Gene set test and wilcoxon rank sum.
> Are there any new changes to  limma towards advanced
> gene set test version.
>
> Please suggest.
> thanks
> srini
>
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