Hi Ben,

I checked it out and found oligo would produce data for two strands, sense
and anti-sense.
Is there a way to somehow combine the two type of data which will make
sense?

Thank-you!

Allen


On 11/8/07, Benilton Carvalho <bcarvalh@jhsph.edu> wrote:
>
> check the oligo package, but you also need to download the data
> packages for the arrays you're using:
>
> pd.mapping250k.sty
> pd.mapping250k.nsp
>
> b
>
> On Nov 8, 2007, at 9:34 PM, affy snp wrote:
>
> > Dear list,
> >
> > I am analyzing a bag of Affy SNP 500K arrays and would like to
> > know which package can be used to read in the raw .CEL files
> > and get the intensity values. In other words, I am looking for
> > the function like:
> >
> > library(affy)
> > mydata <- ReadAffy()
> > eset_rma <- rma(mydata)
> >
> > provided by affy package to analyze affy gene expression data.
> >
> > Thank you very much!
> >
> > Sincerely,
> >       Allen
> >
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>

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