Dear Bioconductor mailing list:

I've been using cosmo to look for motifs.  I'd like to search for motifs that have a variable length of gaps in the middle. If I specify a range of motif widths with the cosmo function, it uses the width with the lowest BIC value and searches for motifs of only that width.  My dilemma is that the motifs I'm looking for are of variable width.

Thanks in advance for any help!

Heather

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