Hi

I am plotting the profiles using the PlotGroups method. I have two groups: control and treated. If a gene is in both groups there are drawn two profile in two different colors (red(controll) and green(treatment)). If the gene is only in the control group only one profile is drawn and it is red. But if the gene is in the treatment group but not in the control group, only one profile is drawn. This profile is also red and the box that tells which color is which group does not change (red = control, green = treatment). Is it something wrong wiht the way colors are set in the method? It looks to me that the first profile to be drawn are to be red, the next green and so on not considering which group the profile belongs too? 

Any comments?

Regards,
Ingrid



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