Hello,
I have a problem when I run R on my Linux SuSE 10.1 show as below. Does someone can give me help to fix it?
Thank you very much!
Weigong Ge
 
wge@NCW04936:~> suPassword:NCW04936:/home/wge # sh /usr/local/tomcat/bin/startup.shUsing CATALINA_BASE:   /usr/local/tomcatUsing CATALINA_HOME:   /usr/local/tomcatUsing CATALINA_TMPDIR: /usr/local/tomcat/tempUsing JRE_HOME:       /usr/lib/jvm/java/jreNCW04936:/home/wge # R
R version 2.5.1 (2007-06-27)Copyright (C) 2007 The R Foundation for Statistical ComputingISBN 3-900051-07-0
R is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details.
  Natural language support but running in an English locale
R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R.
[Previously saved workspace restored]
> library(affy)Loading required package: BiobaseLoading required package: tools
Welcome to Bioconductor
  Vignettes contain introductory material. To view, type  'openVignette()'. To cite Bioconductor, see  'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affyio> Data<-ReadAffy()> cdf=cdfName(Data)> write(cdf,file="cdfname")> eset<-mas5(Data)background correction: masPM/MM correction : masexpression values: masbackground correcting...done.1031 ids to be processed|                    ||####################|> calls<-mas5calls(Data)Getting probe level data...Computing p-valuesMaking P/M/A Calls> tb<-data.frame(exprs(eset),exprs(calls),se.exprs(calls))Error in function (classes, fdef, mtable)  :        unable to find an inherited method for function "se.exprs", for signature "ExpressionSet"> 
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