Hi Olivier,

> I eventually decided to create manually the featureData slot, since  
> I got the following new error with getSnpAnnotation:
>
> > getSnpAnnotation(obj)
> Error en sqliteExecStatement(con, statement, bind.data) :
>   RS-DBI driver: (error in statement: String or BLOB exceeded size  
> limit)

I haven't been able to reproduce the error.  I created an object of  
class SnpCallSet by pre-processing the data provided in the package  
hapmap500knsp with oligo.

sessionInfo() below.

Rob

R version 2.6.0 alpha (2007-09-05 r42788)
x86_64-unknown-linux-gnu

locale:
LC_CTYPE=en_US.iso885915;LC_NUMERIC=C;LC_TIME=en_US.iso885915;LC_COLLATE 
=en_US.iso885915;LC_MONETARY=en_US.iso885915;LC_MESSAGES=en_US.iso885915 
;LC_PAPER=en_US.iso885915;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASU 
REMENT=en_US.iso885915;LC_IDENTIFICATION=C

attached base packages:
[1] splines   tools     stats     graphics  grDevices utils     datasets
[8] methods   base

other attached packages:
[1] hapmap500knsp_1.1        SNPchip_1.1.30            
pd.mapping250k.nsp_0.3.2
[4] oligo_1.1.19             oligoClasses_0.99.1      affxparser_1.9.5
[7] AnnotationDbi_0.1.15     preprocessCore_0.99.18   Biobase_1.15.33
[10] RSQLite_0.6-0            DBI_0.2-3

loaded via a namespace (and not attached):
[1] affyio_1.5.11   rcompgen_0.1-15


| version 2.6.0 alpha (2007-09-05 r42787)
> i386-apple-darwin8.10.1
>
> locale:
> es_ES.UTF-8/es_ES.UTF-8/es_ES.UTF-8/C/es_ES.UTF-8/es_ES.UTF-8
>
> attached base packages:
> [1] splines   tools     stats     graphics  grDevices utils      
> datasets  methods   base
>
> other attached packages:
> [1] VanillaICE_0.99.2           SNPchip_1.1.31               
> pd.mapping250k.nsp_0.3.2
> [4] oligo_1.1.17                oligoClasses_0.0.6           
> affxparser_1.9.4
> [7] AnnotationDbi_0.1.12        preprocessCore_0.99.12       
> BufferedMatrixMethods_1.1.4
> [10] BufferedMatrix_1.1.4        RSQLite_0.6-2               DBI_0.2-3
> [13] affyio_1.5.11               Biobase_1.15.33
>
> --  
> ______________________________________________________________________ 
> __
>
> Olivier G. Nuñez
> nunez@est-econ.uc3m.es
> Universidad Carlos III de Madrid [ Tel : +34 663 03 69 09 ]
> Departamento de Estadistica [ Fax : +34 91 624 98 49 ]
> Facultad de Ciencias Sociales
> C/ Madrid 126 GETAFE 28903 SPAIN
> Web Page: http://www.est-econ.uc3m.es/onunez
>
> ______________________________________________________________________ 
> __
>
>


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