Hi,

When a same probe is assigned to 2 or more probesets (in the CDF file), 
the ReadAffy() function runs oddly.

I give you an exemple to explain my problem :

I create a CDF file with only 2 probesets of 11 probes (PM). In the second 
probeset, one probe (named P) has the same coordinate than in the first 
one.
Then, when I read some CEL files with this cdf environment in R, the 
second probeset has 11 probes but the first one has only 10 probes : the 
intensity of the probe P is missing in the first probeset. 

I don't understand why the function ReadAffy doesn't manage that type of 
design ? 
Do you have any idea about this ?

Best regards,

Maud




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