Cho, K. H., Choo, S. M., Jung, S. H., Kim, J. R., Choi, H. S., & Kim, J.
(2007). Reverse engineering of gene regulatory networks. *IET systems
biology, 1*(3), 149-163.
Would this paper be of any help?
Nicoline


On 8/23/07, Dr Gyorffy Balazs <zsalab2@yahoo.com> wrote:
>
> Hi All,      I have gene expression data for a selected set of genes. In a
> set of different expreriments, these genes were knocked out. Thus, I have a
> table, where the rows begin with the gene names, and the columns indicate
> which gene is knocked out. (example: B3 means the expression of the second
> gen whent the first gene is knocked out).
>
> HOW CAN I MODEL A REGULATORY (INTERACTION) SYTEM FOR THESE GENES? I think
> a Hopfield net might be capable to produce a model, but I don't have any
> software which I could use.
>
> I am very thankful for any kind of help and suggestion.
>
> Best
> Balazs Gyorffy
>
>
>
>
> ---------------------------------
>
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>
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