Hi All,      I have gene expression data for a selected set of genes. In a set of different expreriments, these genes were knocked out. Thus, I have a table, where the rows begin with the gene names, and the columns indicate which gene is knocked out. (example: B3 means the expression of the second gen whent the first gene is knocked out).
   
  HOW CAN I MODEL A REGULATORY (INTERACTION) SYTEM FOR THESE GENES? I think a Hopfield net might be capable to produce a model, but I don't have any software which I could use.
   
  I am very thankful for any kind of help and suggestion.
   
  Best
  Balazs Gyorffy



       
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