Dear List,

I am new in this field, and I currently faced this error when I tried the
mas5 and gcrma functions.   I really appreciate your helps.

Here are the partial R codes and error messages:


# ---------------------------------------

> mas5.expSet <- mas5(celData);

background correction: mas

PM/MM correction : mas

expression values: mas

background correcting...Error in as.vector(data) : NA/NaN/Inf in foreign
function call (arg 1)



> gcrma.expSet <- gcrma(celData);

Adjusting for optical effect.....Done.

Computing affinities.Error in matrix(NA, nrow = max(cbind(pmIndex,
mmIndex)), ncol = 1) :

        matrix: invalid 'nrow' value (too large or NA)



> sessionInfo()

R version 2.5.0 (2007-04-23)

i386-pc-mingw32



locale:

LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252



attached base packages:

[1] "splines"   "tools"     "stats"     "graphics"  "grDevices" "utils"
"datasets"  "methods"   "base"



other attached packages:

  citrusprobe     citruscdf           LPE affycoretools       annaffy
xtable       biomaRt         RCurl           XML       GOstats      Category


     "1.16.0"      "1.16.0"      "1.10.0"       "1.8.0"       "1.8.1"
"1.4-6"      "1.10.0"       "0.8-0"       "1.7-1"       "2.2.5"       "2.2.3"


       Matrix       lattice    genefilter      survival          KEGG
RBGL      annotate            GO         graph         limma         gcrma

  "0.99875-1"      "0.15-4"      "1.14.1"        "2.31"      "1.16.0"      "
1.12.0"      "1.14.1"      "1.16.0"      "1.14.2"      "2.10.5"       "2.8.1"


  matchprobes      affydata          affy        affyio       Biobase
      "1.8.1"      "1.11.2"      "1.14.1"       "1.4.0"      "1.14.0"

Many thanks,

Jason

	[[alternative HTML version deleted]]

