Hello,

I am trying to use SScore for a microarray analysis, but I keep getting a
fatal error:
*******************************************************************
*** caught bus error ***
address 0x8, cause 'non-existent physical address'

Traceback:
 1: .Call("R_affx_get_cel_file_header", filename, PACKAGE = "affxparser")
 2: readCelHeader(filename)
 3: readCel(fname[i], readHeader = FALSE, readIntensities = FALSE,
readStdvs = TRUE, readPixels = TRUE)
 4: SScore(data)

Possible actions:
1: abort (with core dump)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection:
******************************************************************
A co-worker has older versions of R and BioConductor installed and it works
fine.  This was his sessionInfo...

***************************************************************>
sessionInfo()
Version 2.3.1 (2006-06-01)
i386-apple-darwin8.6.1

attached base packages:
[1] "tools"     "methods"   "stats"     "graphics"  "grDevices" "utils"
"datasets"  "base"

other attached packages:
mouse4302cdf    mouse4302      annaffy         KEGG           GO
sscore         affy       affyio      Biobase
    "1.12.0"     "1.12.0"      "1.4.0"     "1.12.0"     "1.12.0"      "1.4.2"
   "1.10.0"      "1.0.0"     "1.10.1"
****************************************************************

And this is my session info...

> sessionInfo()
R version 2.4.1 (2006-12-18)
i386-apple-darwin8.8.1

locale:
en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] "tools"     "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "methods"   "base"

other attached packages:
    sscore affxparser       affy     affyio    Biobase
   "1.6.0"    "1.6.2"   "1.12.2"    "1.2.0"   "1.12.2"

***************************************************************

Is this just an incompatibility issue?  Does anyone have any ideas?

Thanks,

Chris

Chris Parkin
Tufts University Medical School
Center for Neuroscience Research

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