thank you 
  ok mr holger
  i have used an old version of sam so i think this the source of the problem
  i will verify 
  thanks

Holger Schwender <holger.schw@gmx.de> a écrit :
  Actually, I do not know anymore what works in 1.2.0 and not in 1.2.11, as these are pretty old versions which have been updated several times with many major changes. Please use the current version of siggenes, version 1.10.1.

And please let me then know if something does not work in this version.
And if yes, what does not work.

If you do not know how to specify the arguments/options in the function, please take a look in the vignette of siggenes:

> vignette("siggenes")

Almost everything is explained in this vignette (and what is not explained in the vignette is explained in the R News article mentioned -- with link -- in the vignette).

Thanks,
Holger

-------- Original-Nachricht --------
Datum: Thu, 19 Jul 2007 09:17:34 +0200 (CEST)
Von: el mousselly antra 
An: holger.schw@gmx.de
CC: bio c bioconductor 
Betreff: sam and the new version

> dear schwender,
> i am using sam in siggens but i have some problems
> some functions don't work as i have the habit to use it, like
> summary(sam.out)
> sum.sam.out <- summary(sam.out, 0.4, ll = FALSE)
> sum.sam.out@mat.sig
> only function sam work well but a lot of functions functions 
> have some problems or changes that i don'know how but i think
> in the version 1.2.0 in the past 
> have worked but now this new version d'ont work in the version 1.2.11
> i don't know what'the problem and what's i have to do
> thank you 
> sincerly
> 
> 
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