Hi

I have some questions regarding the lumi package:

-	When annotating my data should I use the lumi annotation packaged or is can I use the other Illumina annotation packages?
-	I use the lumi package with bead summary data. How can the VST take advantage of the number of replicates on an Illumina array when it is used on bead summary data (as you say in the user guide)?
-	How do you produce the plot in figure 9 in the user guide?

Regards,
Ingrid





	[[alternative HTML version deleted]]

