Dear,

I try to analyze tiling data for the Mouse Tiling 2.0R Array Set, but I ran
into problems when I try to import the bpmap annotation files.  The function
makePDpackage seems to work fine:

> test <- makePDpackage(designFile="Mm35b_P01R_v02-1_NCBIv33.bpmap",
+                                        file1="Mm35b_P01R_v02.cif",
+                                        manufacturer="affymetrix",
+                                        type="tiling",
+                                        genomebuilder="mg33")
affymetrix tiling
The package will be called pd.mm35b.p01r.v02.1.ncbiv33
Array identified as having 2560 rows and 2560 columns.
Creating package in
/home/jokall/projects/570/BPMAP/pd.mm35b.p01r.v02.1.ncbiv33

However, when I install the created package, I obtain:

* Installing *source* package 'pd.mm35b.p01r.v02.1.ncbiv33' ...
** R
** data
** help
chmod: cannot access
`/home/jokall/R/lib64/R/library/pd.mm35b.p01r.v02.1.ncbiv33/man/pd.mm35b.p01
r.v02.1.ncbiv33.Rd.gz': No such file or directory
 >>> Building/Updating help pages for package 'pd.mm35b.p01r.v02.1.ncbiv33'
     Formats: text html latex example 
** building package indices ...
Error in .readRDS(pfile): error reading from connection
Execution halted
ERROR: installing package indices failed
** Removing '/home/jokall/R/lib64/R/library/pd.mm35b.p01r.v02.1.ncbiv33'

I used makePlatformDesign version 1.0.0 (built R.2.5.0 (2007-04-23) ;
x86_64-unknown-linux-gnu).
Does anybody have a suggestion on how to proceed?

Thanks in advance,

Best regards,
Joke




-- 
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Joke Allemeersch
 
VIB MicroArray Facility
Gasthuisberg Onderwijs en Navorsing 1
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tel: ++32(0) 16 / 34 79 33
fax: ++32(0) 16 / 34 79 40
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