Dear Biocondcutor users 
Can someone help me with the following problem?
I use GEO query to fetch a GDS record from GEO and then I use GDS2eSet to export it into exppressionset. According to the source code GDS2eSet also retrieves GPL record   
    if(is.null(GPL)) {
      GPL <- getGEO(Meta(GDS)$platform)
    }

When the GPL is downloaded I get the following error:
File stored at:
/tmp/RtmpMbEluC/GPL570.soft
Error in validObject(.Object) : invalid class "AnnotatedDataFrame" object:
  AnnotatedDataFrame colnames of data differ from row.names of varMetadata
Execution halted

Interestingly, but I do not get this error on Windows (only linux)
Thanks a lot in advance.
Best,
Sergii Ivakhno

Wellcome Trust Sanger Institute
Wellcome Trust Genome Campus,
Hinxton, Cambridge, CB10 1SA, UK



