Hi Sean,
Sorry for a stupid reply. Yes, on Linux I have installed the latest version of GEOquery "2.0.5", the biobase is installed by the administrators on the Sanger cluster (as I will process a lot of GEO files) and is v. 1.12.2.
Do you think this is due to differences in implementation of biobase, as I am only the bioconductor beginner? Thank you for highly useful package anyway.
Best,
Sergii

Sean Davis <sdavis2@mail.nih.gov> wrote: 
> Sergii Ivakhno wrote:
> > Thanks Sean,
> > The version is:
> > R version 2.4.0 (2006-10-03)
> > x86_64-unknown-linux-gnu
> > locale:
> >
> > attached base packages:
> > [1] "methods"   "stats"     "graphics"  "grDevices" "utils"     "datasets"
> > [7] "base"
> >   
> 
> Thanks, Sergii.  But what versions of GEOquery and Biobase are you using? 
> 
> Sean

