Thanks Sean,
The version is:
R version 2.4.0 (2006-10-03)
x86_64-unknown-linux-gnu
locale:

attached base packages:
[1] "methods"   "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "base"
Best,
Sergii

Sean Davis <sdavis2@mail.nih.gov> wrote: 
> Sergii Ivakhno wrote:
> > Dear Biocondcutor users 
> > Can someone help me with the following problem?
> > I use GEO query to fetch a GDS record from GEO and then I use GDS2eSet to export it into exppressionset. According to the source code GDS2eSet also retrieves GPL record   
> >     if(is.null(GPL)) {
> >       GPL <- getGEO(Meta(GDS)$platform)
> >     }
> >
> > When the GPL is downloaded I get the following error:
> > File stored at:
> > /tmp/RtmpMbEluC/GPL570.soft
> > Error in validObject(.Object) : invalid class "AnnotatedDataFrame" object:
> >   AnnotatedDataFrame colnames of data differ from row.names of varMetadata
> > Execution halted
> >
> > Interestingly, but I do not get this error on Windows (only linux)
> > Thanks a lot in advance.
> >   
> Hi, Sergii.  Could you let me know what version you are using by giving 
> sessionInfo()? 
> 
> Thanks,
> Sean

