Hi Jim,

Thank you!
i searched the list again and find some mail related this problem
i am now trying to fix it
Thank you:)

Li

On 6/7/07, James W. MacDonald <jmacdon@med.umich.edu> wrote:
>
> Hi Daofeng,
>
> Daofeng Li wrote:
> > Could someone give some help or suggestion?
>
> You could search the BioC list. IIRC, somebody posted a function to add
> your own qc parameters to simpleaffy.
>
> Best,
>
> Jim
>
>
> > Thanks in advance:)
> >
> > Li
> >
> >
> > On 6/5/07, Daofeng Li <lidaof@gmail.com> wrote:
> >
> >>my sessioninfo:
> >>
> >>>sessionInfo()
> >>
> >>R version 2.5.0 (2007-04-23)
> >>i686-pc-linux-gnu
> >>
> >>locale:
>
> >>LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
> >>
> >>
> >>attached base packages:
> >>[1] "splines"   "tools"     "stats"     "graphics"  "grDevices" "utils"
> >>[7] "datasets"  "methods"   "base"
> >>
> >>other attached packages:
> >>medicagocdf  simpleaffy  genefilter    survival        affy      affyio
> >>   "1.16.0"    "2.10.3"    "1.14.1"      "2.31"    "1.14.0"     " 1.4.0"
> >>    Biobase
> >>   "1.14.0"
> >>
> >>
> >>On 6/5/07, Daofeng Li <lidaof@gmail.com> wrote:
> >>
> >>>Hi all,
> >>>
> >>>i am use R 2.5.0 and BioC 2.0 under a CentOS 4.4 server
> >>>i am doing a Medicago Genechip
> >>>when i do the qc function provided by simpleaffy
> >>>it says
> >>> "
> >>>
> >>>>qc <- qc(raw.data, x.mas )
> >>>
> >>>Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about
> >>>chip type: medicagocdf
> >>>"
> >>>i searched with Google,find no solution
> >>>is there some idea about that now?
> >>>
> >>>Thanks!
> >>>--
> >>>Daofeng Li
> >>
> >>
> >>
> >>
> >>--
> >>Daofeng Li
> >
> >
> >
> >
> >
>
>
> --
> James W. MacDonald, M.S.
> Biostatistician
> Affymetrix and cDNA Microarray Core
> University of Michigan Cancer Center
> 1500 E. Medical Center Drive
> 7410 CCGC
> Ann Arbor MI 48109
> 734-647-5623
>
>
> **********************************************************
> Electronic Mail is not secure, may not be read every day, and should not
> be used for urgent or sensitive issues.
>



-- 
Daofeng Li

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