dear Seth, dear Bioconductor members,

as far as i understand you are using the annotation package defined with the
"annotation" parameter (GOHyperGParams) to map the submitted EntrezGeneIDs
to the GO terms. this works fine for Affymetrix arrays with available
annotation packages, but we are for example also using Exon arrays and are
annotating the probes on our own. my suggestion is to support also the
mapping from EntrezGene IDs to GO terms using the GO package. this would
allow GO analyses for all microarray platforms, not just Affmetrix arrays
with available annotation packages.


sincerely, jo



-- 
Johannes Rainer, Msc
Tyrolean Cancer Research Institute
Innrain 66, 6020 Innsbruck, Austria
Tel.: +43 512 570485 33
Email: johannes.rainer@tcri.at
          johannes.rainer@tugraz.at

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